首页 全所PI名录
  • 杜振海
  • 研究员,研究组长,博士生导师
  • E-mail: zhenhai.du@sibcb.ac.cn
  • 实验室主页: 
    个人简介:
  • 2013年毕业于中国农业大学,获学士学位;2013年9月至2019年1月就读于清华大学,获博士学位;2019年3月至2025年1月于清华大学生命科学学院从事博士后研究(导师颉伟);于2025年3月起任中科院分子细胞科学卓越创新中心(生物化学与细胞生物学研究所)研究员,研究组长,博士生导师

    社会任职:
    研究方向:
  • 染色质结构、基因调控与细胞命运
    研究工作:
  • 细胞核是一个高度组织化的三维结构,其中DNA、RNA 和蛋白质协同作用,精确调控基因表达和细胞命运。在生命起始阶段,精子和卵子的融合形成受精卵,并发育为新个体。在此过程中,染色质的三维结构和空间定位经历剧烈重塑,这些动态变化与基因组激活、细胞发育潜能转换和细胞分化密切相关。

    本实验室致力于开发和应用高灵敏的染色质分析、DNA/RNA/蛋白互作检测以及三维基因组操控技术,并结合发育生物学、分子生物学、表观遗传学和生物信息学等多学科手段,采用干湿实验结合的策略,探索以下核心科学问题:

    1)哺乳动物生殖和发育过程中染色质三维结构的动态重塑及其生物学功能;

    2)RNA,特别是非编码RNA,如何调控细胞核结构(Nuclear organization)、基因组互作和基因表达;

    3)染色质三维结构对人类健康和疾病的影响,并尝试通过调控核内三维空间结构开发新的检测和干预策略。

    这些研究不仅有助于深化对RNA 介导的染色质调控和基因表达调节的理解,还将为改善生殖健康、提高生育力及防治胚胎发育缺陷提供理论支持和创新技术。

    我们致力于营造开放、协作的研究环境,鼓励交流与创新,欢迎对三维基因组学、表观遗传学及生殖发育感兴趣的学生和博士后加入,共同探索生命起始的奥秘!

    承担科研项目情况:
    代表论著:
  • First-author/co-first author:

    1. Zhenhai Du#, Liangjun Hu#, Zhuoning Zou#, Meishuo Liu#, Zihan Li, Xukun Lu, Clair Harris, Yunlong Xiang, Fengling Chen, Guang Yu, Kai Xu, Feng Kong, Qianhua Xu, Bo Huang, Ling Liu, Qiang Fan, Haifeng Wang*, Sundeep Kalantry*, Wei Xie* (2024) Stepwise de novo establishment of inactive X chromosome architecture in early development. Nature Genetics, Epub ahead of print. Highlighted by Nature Genetics News & Views.
    2. Zhenhai Du, and Wei Xie* (2023) A party for transcription: Multiway interactions of enhancers and promoters. Molecular cell 83: 1542-1544. (Preview)
    3. Zhenhai Du#, Ke Zhang#, Wei Xie* (2022) Epigenetic reprogramming in early animal development. Cold Spring Harbor Perspectives in Biology. The nucleus, second edition 14(6): a039677. (Review)
    4. Xianglin Zhang#, Xuehui Liu#, Zhenhai Du#, Lei Wei, Huan Fang, Qiongye Dong, Jing Niu, Yanda Li, Juntao Gao, Michael Q Zhang, Wei Xie*, Xiaowo Wang* (2021) The loss of heterochromatin is associated with multiscale three-dimensional genome reorganization and aberrant transcription during cellular senescence. Genome Research 31(7): 1121-1135.
    5. Zhenhai Du#, Hui Zheng#, Yumiko K. Kawamura#, Ke Zhang#, Johanna Gassler, Sean Powell, Qianhua Xu, Zili Lin, Kai Xu, Qian Zhou, Evgeniy A. Ozonov, Nathalie Véron, Bo Huang, Lijia Li, Guang Yu, Ling Liu, Wan Kin Au Yeung, Peizhe Wang, Lei Chang, Qiujun Wang, Aibin He, Yujie Sun, Jie Na, Qingyuan Sun, Hiroyuki Sasaki, Kikuë Tachibana, Antoine H.F.M. Peters*, Wei Xie* (2020) Polycomb group proteins regulate chromatin architecture in mouse oocytes and early embryos. Molecular Cell 77: 825-839.
    6. Yao Wang#, Hanben Wang#, Yu Zhang#, Zhenhai Du#, Wei Si#, Suixing Fan, Dongdong Qin, Mei Wang, Yanchao Duan, Lufan Li, Yuying Jiao, Yuanyuan Li, Qiujun Wang, Qinghua Shi, Xin Wu*, Wei Xie* (2019) Reprogramming of meiotic chromatin architecture during spermatogenesis. Molecular Cell 73(3): 547-561. Highlighted by Molecular Cell Previews.
    7. Yu Zhang#, Yunlong Xiang#, Qiangzong Yin#, Zhenhai Du#, Xu Peng, Qiujun Wang, Miguel Fidalgo, Weikun Xia, Yuanyuan Li, Zhen-ao Zhao, Wenhao Zhang, Jing Ma, Feng Xu, Jianlong Wang, Lei Li, Wei Xie* (2018) Dynamic epigenomic landscapes during early lineage specification in mouse embryos. Nature Genetics 50(1): 96-105.
    8. Zhenhai Du, Hui Zheng, Bo Huang, Rui Ma, Jingyi Wu, Xianglin Zhang, Jing He, Yunlong Xiang, Qiujun Wang, Yuanyuan Li, Jing Ma, Xu Zhang, Ke Zhang, Yang Wang, Michael Q Zhang, Juntao Gao, Jesse R Dixon, Xiaowo Wang, Jianyang Zeng, Wei Xie* (2017) Allelic reprogramming of 3D chromatin architecture during early mammalian development. Nature 547(7662): 232-235.
    9. Co-author:

    10. Ke Zhang#, Dan-Ya Wu#, Hui Zheng#, Yao Wang#, Qiao-Ran Sun, Xin Liu, Li-Yan Wang, Wen-Jing Xiong, Qiujun Wang, James D.P. Rhodes, Kai Xu, Lijia Li, Zili Lin, Guang Yu, Weikun Xia, Bo Huang, Zhenhai Du, Yao Yao, Kim A. Nasmyth, Robert J. Klose, Yi-Liang Miao*, Wei Xie* (2020) Analysis of genome architecture during SCNT reveals a role of cohesin in impeding minor ZGA. Molecular Cell 79: 234-250.
    11. Yunlong Xiang#, Yu Zhang#, Qianhua Xu, Chen Zhou, Bofeng Liu, Zhenhai Du, Ke Zhang, Bingjie Zhang, Xiaoxiao Wang, Srimonta Gayen, Ling Liu, Yao Wang, Yuanyuan Li, Qiujun Wang, Sundeep Kalantry, Lei Li, Wei Xie* (2020) Epigenomic analysis of gastrulation identifies a unique chromatin state for primed pluripotency. Nature Genetics 52: 95-105.
    12. Qianhua Xu#, Yunlong Xiang#, Qiujun Wang#, Leyun Wang#, Julie Brind’Amour, Aaron Blair Bogutz, Yu Zhang, Bingjie Zhang, Guang Yu, Weikun Xia, Zhenhai Du, Chunyi Huang, Jing Ma, Hui Zheng, Yuanyuan Li, Chao Liu, Cheryl Lyn Walker, Eric Jonasch, Louis Lefebvre, Min Wu, Matthew Lorincz, Wei Li*, Li Li*, Wei Xie* (2019) SETD2 regulates the maternal epigenome and embryonic development. Nature Genetics 51:844-856.
    13. Clair Harris#, Marissa Cloutier#, Megan Trotter, Michael Hinten, Srimonta Gayen, Zhenhai Du, Wei Xie, Sundeep Kalantry* (2019) Conversion of random X-inactivation to imprinted X-inactivation by maternal PRC2. Elife 8: e44258.
    14. Yuanyuan Li#, Hui Zheng#, Qiujun Wang, Chen Zhou, Lei Wei, Xuehui Liu, Wenhao Zhang, Yu Zhang, Zhenhai Du, Xiaowo Wang, Wei Xie* (2018) Genomewide analyses reveal a role of Polycomb in promoting hypomethylation of DNA methylation valley. Genome Biology 19(1): 18.
    15. Zhou Yu, Kaiju Jiang, Zijian Xu, Huanwei Huang, Nannan Qian, Zhiwei Lu, Daoming Chen, Ruonan Di, Tianyi Yuan, Zhenhai Du, Wei Xie, Xiaoling Lu, Huawei Li, Renjie Chai, Yong Yang, Bing Zhu, Tetsuo Kunieda, Fengchao Wang, Ting Chen* (2018) Hoxc-Dependent Mesenchymal Niche Heterogeneity Drives Regional Hair Follicle Regeneration. Cell Stem Cell 23: 487-500.
    16. Yuwen Ke#, Yanan Xu#, Xuepeng Chen#, Songjie Feng#, Zhenbo Liu, Yaoyu Sun, Xuelong Yao, Fangzhen Li, Wei Zhu, Lei Gao, Haojie Chen, Zhenhai Du, Wei Xie, Xiaocui Xu, Xingxu Huang*, Jiang Liu* (2017) 3D Chromatin Structures of Mature Gametes and Structural Reprogramming during Mammalian Embryogenesis. Cell 170: 367-381.
    17. Hui Zheng#, Bo Huang#, Bingjie Zhang#, Yunlong Xiang, Zhenhai Du, Qianhua Xu, Yuanyuan Li, Qiujun Wang, Jing Ma, Xu Peng, Feng Xu, Wei Xie* (2016) Resetting Epigenetic Memory by Reprogramming of Histone Modifications in Mammals. Molecular Cell 63: 1066-1079
    获奖及荣誉:
    研究组成员: